Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0805299.1a.1a.1b with 1 members (zinc finger and BTB domain containing)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia / Lophotrochozoa / Platyhelminthes

Completeness score: 0.20

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This HOG has 40 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0805299.1a.1a	96	311	zinc finger and BTB domain containing
2	HOG:E0805299.1a.1a.9b	76	167	zinc finger and BTB domain containing
3	HOG:E0805299	16	361	zinc finger and BTB domain containing
4	HOG:E0017603	15	163	Putative uncharacterized protein
5	HOG:E0805299.1a.1a.9b.4c	13	71	zinc finger and BTB domain containing
6	HOG:E0805299.1a	7	327	zinc finger and BTB domain containing
7	HOG:E0805299.1a.1a.9b.4c.1b	5	5	zinc finger and BTB domain containing
8	HOG:E0805299.1a.1a.9b.3b	3	3	zinc finger and BTB domain containing
9	HOG:E0805299.2a	2	3	zinc finger and BTB domain containing
10	HOG:E0805299.1a.1b	2	5	zinc finger and BTB domain containing
11	HOG:E0805299.1a.1a.9a	2	8	zinc finger and BTB domain containing
12	HOG:E0805299.1a.1a.3b	2	2	zinc finger and BTB domain containing
13	HOG:E0805299.2b	1	1	zinc finger and BTB domain containing
14	HOG:E0805299.1a.2b	1	1	zinc finger and BTB domain containing
15	HOG:E0805299.1a.2a	1	1	zinc finger and BTB domain containing
16	HOG:E0805299.1a.1b.10b	1	2	zinc finger and BTB domain containing
17	HOG:E0805299.1a.1b.10a	1	1	zinc finger and BTB domain containing
18	HOG:E0805299.1a.1a.9b.4c.6a	1	1	zinc finger and BTB domain containing
19	HOG:E0805299.1a.1a.9b.4c.5b	1	1	zinc finger and BTB domain containing
20	HOG:E0805299.1a.1a.9b.4c.2b.1b	1	1	zinc finger and BTB domain containing
21	HOG:E0805299.1a.1a.9b.4c.2b	1	4	zinc finger and BTB domain containing
22	HOG:E0805299.1a.1a.9b.4c.2a	1	1	zinc finger and BTB domain containing
23	HOG:E0805299.1a.1a.9b.4c.1a	1	1	zinc finger and BTB domain containing
24	HOG:E0805299.1a.1a.9b.4b	1	1	zinc finger and BTB domain containing
25	HOG:E0805299.1a.1a.9b.3a	1	1	zinc finger and BTB domain containing

Showing 1 to 25 of 40 rows rows per page